usefragsph not on
There are 31 ligand heavy atoms
Ligand center of coords (x y z): 5.87454838709677 -39.4847741935484 0.61358064516129
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 874
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 543
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 537
Number of spheres polar: 162, nonpolar: 246, out of current total: 537
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.04861 15.30282 -48.94506 -29.52986 -9.35143 10.59919
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 318
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 285
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 247
Spheres center of coords (x y z): 4.03138967611336 -39.339365222672 -0.0152195951417002
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.59870142620007
Final number of output spheres is: 60
Number of polar spheres: 20
Number of nonpolar spheres: 35
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 31