usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): -34.9015 38.11546875 32.18475 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 864 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 453 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 443 Number of spheres polar: 171, nonpolar: 167, out of current total: 443 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -44.45848 -25.03074 28.83628 48.09162 22.18589 42.11390 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 271 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 234 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 193 Spheres center of coords (x y z): -35.2069494818653 37.2480069948187 33.6676547150259 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.76293412498305 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 18 Final number of spheres that are from crystallographic ligand: 32