There are 32 ligand heavy atoms Ligand center of coords (x y z): -34.9015 38.11546875 32.18475 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 10479 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 6365 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 6365 Number of spheres polar: 3372, nonpolar: 2590, out of current total: 6365 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -46.89480 -22.93060 26.12780 50.09360 20.18660 44.15360 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 938 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 599 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 593 Spheres center of coords (x y z): -33.3563416526138 36.648021247892 31.9561844856661 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 9.1679706180432 Final number of output spheres is: 120 Number of polar spheres: 59 Number of nonpolar spheres: 47 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 32