DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-2-09.c.bkslab.org 10-Apr-12 19:29:30 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../../lig/db.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1651680 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min -58.79000 23.29600 9.771000 grid max -19.79000 59.29600 49.77100 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 30 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 12.65087 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 SUB_201_1 7405 4421642 32 403 5647.9 11.70 E SUB_201_1 2 -5.27 -25.68 3.78 -2.58 -29.74 2 SUB_201_1 8243 5152841 32 1701 4277.7 12.30 E SUB_201_1 3 -4.60 -25.01 3.60 -2.25 -28.27 3 SUB_201_1 7348 4850852 32 238 3787.0 11.20 E SUB_201_1 2 -0.75 -28.25 3.33 -3.09 -28.76 4 SUB_201_1 7392 5801304 32 1150 4384.3 12.90 E SUB_201_1 2 -4.18 -25.09 2.38 -3.92 -30.81 5 SUB_201_1 14806 9064792 32 4298 6632.5 19.42 E SUB_201_1 3 -5.99 -31.62 4.43 -2.78 -35.96 6 SUB_201_1 7365 6933744 32 244 3916.8 14.96 E SUB_201_1 2 -3.05 -31.72 4.43 -2.73 -33.07 7 SUB_201_1 7446 5677510 32 525 2244.3 12.51 E SUB_201_1 2 -2.16 -29.18 4.10 -3.28 -30.52 8 SUB_201_1 8246 5029124 32 1840 4948.4 12.81 E SUB_201_1 3 -4.60 -24.44 1.93 -3.30 -30.41 9 SUB_201_1 7356 5589791 32 225 3982.7 11.87 E SUB_201_1 2 -1.53 -31.19 5.34 -2.80 -30.18 10 SUB_201_1 6111 4567922 32 1025 1600.1 11.20 E SUB_201_1 2 -1.70 -26.85 3.14 -3.28 -28.69 11 SUB_201_1 14803 7536093 32 2904 2151.5 17.16 E SUB_201_1 3 -3.57 -32.61 6.05 -3.09 -33.22 12 SUB_201_1 7351 6061613 32 188 5881.6 13.07 E SUB_201_1 2 -4.93 -26.16 5.58 -2.37 -27.88 EOF: ../../lig/db.db.gz end of file encountered total minimization steps = 3599611 for debugging, time = 162.4000 solvation corrected scores: (a) 1 SUB_201_1 score: -35.965 nathvy = 32 nconfs = 4298 2 SUB_201_1 score: -33.224 nathvy = 32 nconfs = 2904 3 SUB_201_1 score: -33.069 nathvy = 32 nconfs = 244 4 SUB_201_1 score: -30.807 nathvy = 32 nconfs = 1150 5 SUB_201_1 score: -30.519 nathvy = 32 nconfs = 525 6 SUB_201_1 score: -30.412 nathvy = 32 nconfs = 1840 7 SUB_201_1 score: -30.184 nathvy = 32 nconfs = 225 8 SUB_201_1 score: -29.744 nathvy = 32 nconfs = 403 9 SUB_201_1 score: -28.757 nathvy = 32 nconfs = 238 10 SUB_201_1 score: -28.689 nathvy = 32 nconfs = 1025 11 SUB_201_1 score: -28.267 nathvy = 32 nconfs = 1701 12 SUB_201_1 score: -27.876 nathvy = 32 nconfs = 188 Date and Time: 10-Apr-12 19:32:19 elapsed time (sec): 162.4200