usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 17.4159117647059 134.213852352941 -4.37976470588235 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1756 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1034 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1034 Number of spheres polar: 226, nonpolar: 418, out of current total: 1034 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.19672 27.31482 124.23521 144.20259 -14.36088 5.61940 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 590 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 531 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 499 Spheres center of coords (x y z): 18.9432670741483 135.396559599198 -2.11118541082164 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.86568131131831 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 23 Final number of spheres that are from crystallographic ligand: 34