usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 17.702 133.729862068966 -1.46127586206897 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1389 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1041 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1041 Number of spheres polar: 237, nonpolar: 421, out of current total: 1041 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.94843 27.63023 124.16245 143.69897 -11.10716 8.39771 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 381 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 326 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 317 Spheres center of coords (x y z): 19.1114505362776 135.395512365931 -0.919361482649844 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.147784604098 Final number of output spheres is: 45 Number of polar spheres: 6 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 23 Final number of spheres that are from crystallographic ligand: 29