usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 70.6036 20.1802857142857 -0.628257142857143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1557 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 956 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 956 Number of spheres polar: 196, nonpolar: 389, out of current total: 956 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 60.65459 79.60960 10.23200 30.05477 -10.55640 8.30536 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 370 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 302 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 294 Spheres center of coords (x y z): 68.8839540136055 19.7117570408163 -1.63978846938776 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.63358423649435 Final number of output spheres is: 45 Number of polar spheres: 4 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 21 Final number of spheres that are from crystallographic ligand: 35