usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 16.1544 129.6886995 -2.77365 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1511 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 890 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 890 Number of spheres polar: 271, nonpolar: 436, out of current total: 890 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.04939 26.09055 124.53766 139.68819 -12.76334 7.02734 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 256 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 216 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 200 Spheres center of coords (x y z): 19.51208855 133.53744445 -0.5786266 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.42572032508887 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 20