usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 17.6806666666667 129.676201333333 -2.5772 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1431 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 819 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 819 Number of spheres polar: 313, nonpolar: 344, out of current total: 819 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.45241 27.65998 124.72739 139.66759 -12.56400 7.32230 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 440 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 340 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 242 Spheres center of coords (x y z): 21.702757107438 131.705073842975 0.00399648760330638 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.24288132963989 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 15