usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 15.9972 129.8840475 -3.23005 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1565 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 937 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 937 Number of spheres polar: 315, nonpolar: 445, out of current total: 937 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.92855 25.97690 124.28478 139.87883 -13.16752 6.73891 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 442 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 379 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 357 Spheres center of coords (x y z): 18.8307436694678 133.151567002801 -1.30487789915966 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.14230751594375 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 40 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 20