usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 20.981875 129.801707916667 -1.663875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1282 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 798 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 798 Number of spheres polar: 169, nonpolar: 347, out of current total: 798 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.51272 30.97730 119.99841 139.74757 -11.61430 8.32781 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 459 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 399 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 385 Spheres center of coords (x y z): 20.6621974545455 133.261229272727 -0.855714181818181 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.04788495915874 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 24