usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 105.312791666667 25.32 32.315875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1344 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 812 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 812 Number of spheres polar: 286, nonpolar: 393, out of current total: 812 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 95.32401 115.25838 15.33400 33.98192 22.42463 42.17901 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 243 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 196 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 183 Spheres center of coords (x y z): 106.450439180328 21.569172295082 30.9885861202186 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.98522809001769 Final number of output spheres is: 45 Number of polar spheres: 24 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 24