usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 101.7722 25.6863333333333 31.9100666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1410 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 712 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 712 Number of spheres polar: 248, nonpolar: 320, out of current total: 712 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 94.03982 111.76065 15.72083 30.49990 23.29949 41.87546 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 367 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 310 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 252 Spheres center of coords (x y z): 106.056794325397 22.9376745238095 31.3531313888889 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.25669258351816 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 40 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 15