usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 32.0516206896552 92.9040689655172 64.3575517241379 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1542 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 949 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 949 Number of spheres polar: 231, nonpolar: 415, out of current total: 949 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.07420 40.52376 82.91287 102.81400 54.36889 72.64956 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 506 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 445 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 429 Spheres center of coords (x y z): 30.366678974359 90.8988434498834 62.6485196037296 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.64131549558465 Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 40 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 29