usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): 52.4932894736842 50.8449473684211 1.62010526315789 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2110 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1222 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1222 Number of spheres polar: 243, nonpolar: 494, out of current total: 1222 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 42.50407 62.49184 40.86791 60.55161 -8.18664 11.58732 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 436 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 375 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 357 Spheres center of coords (x y z): 50.4302747899159 49.431766022409 0.33201056022409 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.63178423442999 Final number of output spheres is: 45 Number of polar spheres: 7 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 23 Final number of spheres that are from crystallographic ligand: 38