usefragsph not on
There are 20 ligand heavy atoms
Ligand center of coords (x y z): 55.55545 45.30195 1.0301
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1400
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 816
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 815
Number of spheres polar: 228, nonpolar: 305, out of current total: 815
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 45.61410 64.87726 35.41646 55.28698 -8.33338 11.01402
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 430
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 392
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 366
Spheres center of coords (x y z): 52.345553852459 46.112977431694 0.106188087431694
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.85308749566736
Final number of output spheres is: 60
Number of polar spheres: 18
Number of nonpolar spheres: 29
Number of spheres that are near neither polar nor nonpolar receptor atoms: 13
Final number of spheres that are from crystallographic ligand: 20