usefragsph not on
There are 20 ligand heavy atoms
Ligand center of coords (x y z): 55.54645 44.9068 0.75185
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1490
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 807
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 807
Number of spheres polar: 224, nonpolar: 309, out of current total: 807
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 45.63364 64.29430 34.95320 54.86681 -8.36185 10.68531
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 251
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 211
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 197
Spheres center of coords (x y z): 52.3450923350254 46.1095847208122 0.473139746192894
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.0412047879395
Final number of output spheres is: 45
Number of polar spheres: 15
Number of nonpolar spheres: 21
Number of spheres that are near neither polar nor nonpolar receptor atoms: 9
Final number of spheres that are from crystallographic ligand: 20