usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 51.2414571428572 49.6730857142857 -1.00571428571429 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1598 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1030 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1030 Number of spheres polar: 212, nonpolar: 388, out of current total: 1030 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 41.26268 61.18901 39.69727 59.40400 -10.81324 8.98798 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 397 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 339 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 330 Spheres center of coords (x y z): 49.3832524242424 48.5951395151515 -0.213683545454546 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.04402548077149 Final number of output spheres is: 45 Number of polar spheres: 5 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 19 Final number of spheres that are from crystallographic ligand: 35