usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 191.901344827586 123.034586206897 31.8916551724138 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1495 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 845 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 845 Number of spheres polar: 243, nonpolar: 338, out of current total: 845 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 181.94177 201.86023 113.23191 132.97574 21.93524 41.67118 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 462 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 404 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 367 Spheres center of coords (x y z): 191.664128446866 126.034728147139 32.6197401362398 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.43975066498053 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 29