usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): 186.441610555556 130.564054722222 33.5471666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1456 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 963 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 959 Number of spheres polar: 216, nonpolar: 362, out of current total: 959 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 177.41862 196.42900 120.57050 140.55980 23.68933 43.36371 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 611 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 536 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 530 Spheres center of coords (x y z): 188.348588415094 130.293738037736 32.4068066792453 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.16418694170233 Final number of output spheres is: 60 Number of polar spheres: 11 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 18 Final number of spheres that are from crystallographic ligand: 36