usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 192.8788505 124.3277 31.63385 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1398 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 909 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 907 Number of spheres polar: 312, nonpolar: 380, out of current total: 907 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 183.11084 202.85454 114.43778 134.31944 21.63983 40.92405 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 251 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 205 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 155 Spheres center of coords (x y z): 195.903002967742 127.143212387097 33.5774417419355 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.90315660819954 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 20