usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 100.921470588235 19.2617352941176 31.5330294117647 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1637 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1033 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1031 Number of spheres polar: 233, nonpolar: 448, out of current total: 1031 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 92.25236 110.91682 9.29666 28.81800 22.84850 41.48605 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 365 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 315 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 312 Spheres center of coords (x y z): 102.637499679487 18.8755447115385 32.4745019871795 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.81816272824016 Final number of output spheres is: 45 Number of polar spheres: 5 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 21 Final number of spheres that are from crystallographic ligand: 34