usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 105.130208333333 25.4019583333333 32.395625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1703 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 929 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 929 Number of spheres polar: 314, nonpolar: 440, out of current total: 929 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 95.14294 115.08318 15.42290 33.74712 22.55450 42.27513 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 430 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 377 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 306 Spheres center of coords (x y z): 107.671208856209 22.3885004248366 30.9780082352941 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.86605101895466 Final number of output spheres is: 60 Number of polar spheres: 27 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 24