usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 105.114875 25.3505 32.403875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1492 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 924 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 924 Number of spheres polar: 328, nonpolar: 396, out of current total: 924 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 95.21815 115.08943 15.38451 33.84109 22.59000 42.28952 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 442 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 386 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 371 Spheres center of coords (x y z): 106.146453908356 21.2182094609164 31.3442901617251 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.21052339098633 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 24