usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 30.8851034482759 92.1566206896551 63.4581034482759 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1725 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1064 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1064 Number of spheres polar: 322, nonpolar: 571, out of current total: 1064 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.89935 39.39935 82.16409 102.09700 53.49353 72.66602 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 536 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 452 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 439 Spheres center of coords (x y z): 28.9297419589977 90.0431578359908 61.6090442596811 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.40212309796091 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 29