usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): 68.5257777777778 78.0041944444444 0.148444444444444 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1687 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1010 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1009 Number of spheres polar: 221, nonpolar: 402, out of current total: 1009 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 58.54007 78.52460 68.55339 87.99010 -9.82700 10.06399 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 591 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 543 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 535 Spheres center of coords (x y z): 68.7248141308412 79.7503391214954 -1.00293403738318 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.08218624785773 Final number of output spheres is: 60 Number of polar spheres: 9 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 24 Final number of spheres that are from crystallographic ligand: 36