usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 65.9844166666667 25.3175 -0.984041666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1594 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 924 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 924 Number of spheres polar: 220, nonpolar: 459, out of current total: 924 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 56.00700 75.93089 15.35320 34.17014 -10.92960 8.86744 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 463 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 409 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 393 Spheres center of coords (x y z): 65.2186881170484 21.3848201017812 0.178153256997455 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.18921930640636 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 24