usefragsph not on There are 42 ligand heavy atoms Ligand center of coords (x y z): -70.7715238095238 -20.4882619047619 1.4797380952381 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1775 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 986 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 985 Number of spheres polar: 185, nonpolar: 413, out of current total: 985 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -79.61299 -60.83133 -30.44900 -10.54647 -8.33087 10.96898 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 572 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 510 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 502 Spheres center of coords (x y z): -68.9290359362549 -20.4372703585658 1.1900421314741 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.50774122700631 Final number of output spheres is: 60 Number of polar spheres: 7 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 32 Final number of spheres that are from crystallographic ligand: 42