usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): -69.2274166666667 -20.0818611111111 2.31697222222222 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1512 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1014 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1012 Number of spheres polar: 220, nonpolar: 430, out of current total: 1012 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -77.13734 -59.26900 -29.95637 -10.10534 -7.55936 9.88358 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 590 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 519 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 516 Spheres center of coords (x y z): -68.1477270155039 -19.5363837596899 0.590573158914729 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.83857616104913 Final number of output spheres is: 60 Number of polar spheres: 9 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 29 Final number of spheres that are from crystallographic ligand: 36