usefragsph not on
There are 35 ligand heavy atoms
Ligand center of coords (x y z): 56.4424 -48.7706285714286 2.66171428571429
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1811
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1027
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1027
Number of spheres polar: 212, nonpolar: 463, out of current total: 1027
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 46.46438 66.34900 -58.76924 -38.96928 -7.30940 12.64214
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 583
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 512
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 508
Spheres center of coords (x y z): 53.992097007874 -50.0836446456694 2.73709061023622
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.53228124383449
Final number of output spheres is: 60
Number of polar spheres: 13
Number of nonpolar spheres: 33
Number of spheres that are near neither polar nor nonpolar receptor atoms: 14
Final number of spheres that are from crystallographic ligand: 35