usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 187.365405405405 129.558837837838 33.5458108108108 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1640 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1050 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1049 Number of spheres polar: 216, nonpolar: 477, out of current total: 1049 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 179.07866 197.27859 119.58734 139.53685 23.55127 43.01796 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 398 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 337 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 333 Spheres center of coords (x y z): 188.885537357357 129.244898348349 32.2613611111111 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.98691903615917 Final number of output spheres is: 45 Number of polar spheres: 7 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 19 Final number of spheres that are from crystallographic ligand: 37