Distance from surface specified: 1.80 There are 43 ligand heavy atoms Ligand center of coords (x y z): 17.0561627906977 -23.5730697674419 3.58241860465116 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 12932 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 10784 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 10275 Number of spheres polar: 6031, nonpolar: 3008, out of current total: 10275 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.10500 31.05480 -37.56980 -9.58680 -10.40060 17.57820 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1196 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 633 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 622 Spheres center of coords (x y z): 18.805836977492 -18.8138932475884 1.62894340836013 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 8.51641922762116 Final number of output spheres is: 200 Number of polar spheres: 82 Number of nonpolar spheres: 94 Number of spheres that are near neither polar nor nonpolar receptor atoms: 24 Final number of spheres that are from crystallographic ligand: 43