usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 15.4893529411765 33.2115294117647 -8.59852941176471 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1439 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 762 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 761 Number of spheres polar: 346, nonpolar: 321, out of current total: 761 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.53615 25.44587 23.32587 43.19759 -18.14019 1.30072 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 393 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 342 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 263 Spheres center of coords (x y z): 13.5910942205323 35.9416305703422 -8.02545863117871 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.92712201543844 Final number of output spheres is: 60 Number of polar spheres: 32 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 17