usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): 15.1554375 33.514625 -8.3803125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1531 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 826 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 826 Number of spheres polar: 393, nonpolar: 357, out of current total: 826 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.16086 25.13734 23.51715 43.43900 -18.03791 1.60318 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 371 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 302 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 228 Spheres center of coords (x y z): 12.6196334649123 35.9364000438596 -6.20120171052631 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.33435738836458 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 16