usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): 15.477875 78.2915 24.9219375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1707 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 957 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 957 Number of spheres polar: 483, nonpolar: 359, out of current total: 957 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.57159 25.45039 68.29677 88.27871 14.93577 34.61967 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 253 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 196 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 148 Spheres center of coords (x y z): 13.6126083783784 76.2430758783784 23.4674815540541 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.90914559125719 Final number of output spheres is: 45 Number of polar spheres: 28 Number of nonpolar spheres: 11 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 16