usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): 15.6157142857143 77.4905 26.2052142857143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1351 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 806 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 801 Number of spheres polar: 416, nonpolar: 293, out of current total: 801 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.61810 25.54655 67.51065 87.48618 16.26959 36.16355 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 408 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 340 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 271 Spheres center of coords (x y z): 13.314935498155 75.048517195572 25.6430051660517 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.96329006746052 Final number of output spheres is: 60 Number of polar spheres: 36 Number of nonpolar spheres: 14 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 14