usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): 15.2782857142857 78.2667857142857 25.6875714285714 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1531 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 996 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 967 Number of spheres polar: 480, nonpolar: 319, out of current total: 967 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.28601 25.27516 68.31474 88.21281 16.46384 35.46564 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 469 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 408 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 389 Spheres center of coords (x y z): 14.6860023650386 77.3495119023135 24.349881748072 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.53424737762812 Final number of output spheres is: 60 Number of polar spheres: 33 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 14