usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 15.5574705882353 33.1888823529412 -8.61035294117647 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1342 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 736 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 736 Number of spheres polar: 334, nonpolar: 318, out of current total: 736 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.59290 25.53371 23.25024 43.07207 -18.51278 1.32306 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 370 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 322 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 242 Spheres center of coords (x y z): 13.7605566115703 35.8760357438016 -8.4175876446281 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.63113857617233 Final number of output spheres is: 60 Number of polar spheres: 33 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 17