usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 15.2378 32.28695 -8.38475 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1455 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 772 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 770 Number of spheres polar: 382, nonpolar: 312, out of current total: 770 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.26218 25.16137 22.44221 42.27110 -18.25631 1.60281 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 408 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 347 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 270 Spheres center of coords (x y z): 13.3116617037037 35.7873458148148 -7.93436018518519 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.82685466687298 Final number of output spheres is: 60 Number of polar spheres: 32 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 20