usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 15.8739411764706 33.5990588235294 -8.96670588235294 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1732 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 836 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 836 Number of spheres polar: 384, nonpolar: 359, out of current total: 836 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.88419 25.86241 23.62539 43.52101 -18.89599 1.02554 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 255 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 199 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 140 Spheres center of coords (x y z): 13.1592035714286 35.9732518571428 -8.2573315 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.88285980211806 Final number of output spheres is: 45 Number of polar spheres: 28 Number of nonpolar spheres: 14 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 17