usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): 15.6190625 77.12525 26.6965625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1717 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 950 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 950 Number of spheres polar: 461, nonpolar: 403, out of current total: 950 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.66155 25.46540 67.12688 87.11005 16.72213 36.67567 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 443 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 363 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 282 Spheres center of coords (x y z): 12.8997703546099 74.1830829432625 25.5184205319149 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.60587456605446 Final number of output spheres is: 60 Number of polar spheres: 49 Number of nonpolar spheres: 8 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 16