usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 3.60135 74.98755 27.7689 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1702 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1099 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1099 Number of spheres polar: 288, nonpolar: 472, out of current total: 1099 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.36600 13.59589 64.98844 83.39137 17.76902 37.74421 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 603 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 527 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 520 Spheres center of coords (x y z): 3.92590403846154 71.1537390769231 27.8968830192308 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.24176521989338 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 20