usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): 15.1554375 33.514625 -8.3803125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1419 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 688 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 688 Number of spheres polar: 226, nonpolar: 327, out of current total: 688 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.16006 25.13294 23.54137 43.48441 -17.98141 1.60902 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 190 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 149 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 108 Spheres center of coords (x y z): 12.7768823148148 35.5236762037037 -6.24213768518519 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.52276312216286 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 14 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 16