Distance from surface specified: 1.80 There are 16 ligand heavy atoms Ligand center of coords (x y z): 15.1554375 33.514625 -8.3803125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 15303 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 12837 WARNING: removing a crystallographic sphere that is distance 1.78716563306259 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 12836 Number of spheres polar: 6819, nonpolar: 4087, out of current total: 12836 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.17680 29.15300 19.51880 47.50620 -22.31440 5.51700 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1267 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 611 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 556 Spheres center of coords (x y z): 17.8085446043166 35.1812636690648 -5.82086474820144 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 14.0659265633956 Final number of output spheres is: 200 Number of polar spheres: 135 Number of nonpolar spheres: 41 Number of spheres that are near neither polar nor nonpolar receptor atoms: 24 Final number of spheres that are from crystallographic ligand: 15