Distance from surface specified: 1.80 There are 36 ligand heavy atoms Ligand center of coords (x y z): 39.8517222222222 30.2946666666667 9.33466666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 21979 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 15510 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 14944 Number of spheres polar: 8094, nonpolar: 5399, out of current total: 14944 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 25.85480 53.83620 16.29820 44.28180 -4.65160 23.32360 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 2075 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 786 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 710 Spheres center of coords (x y z): 39.6971295774648 29.3461760563381 11.8034061971831 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 12.3480747550006 Final number of output spheres is: 200 Number of polar spheres: 109 Number of nonpolar spheres: 75 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 36