usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 30.8626216216216 8.17718918918919 4.08524324324324 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1577 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 575 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 575 Number of spheres polar: 200, nonpolar: 299, out of current total: 575 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.87598 40.83666 -1.81600 18.10425 -5.89808 14.06806 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 305 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 256 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 148 Spheres center of coords (x y z): 30.6761794594595 8.11150554054054 4.10854668918919 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.90901429769806 Final number of output spheres is: 60 Number of polar spheres: 10 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 37