usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 95.3130810810811 -4.32272972972973 20.533054054054 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1923 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 671 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 671 Number of spheres polar: 213, nonpolar: 393, out of current total: 671 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 85.33675 105.29844 -13.96899 5.67511 10.54003 30.47980 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 324 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 279 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 207 Spheres center of coords (x y z): 94.1754882608696 -3.93891285024155 19.2326678260869 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.32037967584199 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 37