usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): -46.02728125 14.10515625 -42.2165625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2026 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 704 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 704 Number of spheres polar: 187, nonpolar: 412, out of current total: 704 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -56.02422 -38.46843 4.81640 24.10052 -52.21531 -32.22229 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 225 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 167 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 122 Spheres center of coords (x y z): -44.8653504918033 16.0619831147541 -43.4257220491804 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.62443164399773 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 32