usefragsph not on
There are 47 ligand heavy atoms
Ligand center of coords (x y z): 59.4074468085106 4.84934042553191 -3.16546808510638
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2264
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 795
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 783
Number of spheres polar: 259, nonpolar: 392, out of current total: 783
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 49.41458 69.37275 -4.99230 14.77367 -13.16097 6.81996
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 398
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 338
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 293
Spheres center of coords (x y z): 57.9665323890785 5.85208593856655 -2.28039085324232
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 3.56530069951798
Final number of output spheres is: 60
Number of polar spheres: 10
Number of nonpolar spheres: 41
Number of spheres that are near neither polar nor nonpolar receptor atoms: 9
Final number of spheres that are from crystallographic ligand: 47