usefragsph not on
There are 36 ligand heavy atoms
Ligand center of coords (x y z): 39.8517222222222 30.2946666666667 9.33466666666667
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2181
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 905
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 905
Number of spheres polar: 237, nonpolar: 494, out of current total: 905
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 29.86082 49.79354 20.30415 40.18764 -0.66337 19.28374
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 433
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 355
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 233
Spheres center of coords (x y z): 38.755984806867 31.7425793991416 7.51928755364807
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 3.49833267894098
Final number of output spheres is: 60
Number of polar spheres: 12
Number of nonpolar spheres: 36
Number of spheres that are near neither polar nor nonpolar receptor atoms: 12
Final number of spheres that are from crystallographic ligand: 36